Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO4506Hypothetical iron-sulfur cluster-binding protein; Predicted by orpheus program; predicted by glimmer program. (581 aa)    
Predicted Functional Partners:
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.997
RSC2375
Hypothetical chaperone; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.969
CJ1511C
Putative formate dehydrogenase largesubunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.967
WS0479
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 0.953
RS01174
Putative formate dehydrogenase, iron-sulfur subunit; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.948
VV21360
Putative formate dehydrogenase, alphasubunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.947
MDH
Putative malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
  
 
 0.908
PBPRB1795
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.908
PBPRA1866
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.901
CV0599
Putative cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.894
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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