Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO4504Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (160 aa)    
Predicted Functional Partners:
PBPRA1866
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.991
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.910
SO4506
Hypothetical iron-sulfur cluster-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.892
RSC2375
Hypothetical chaperone; Predicted by orpheus program; predicted by glimmer program.
 
    0.875
SO4502
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.874
RS01179
Putative formate dehydrogenase accessory protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
 
 
 0.840
SO4723
Putative molybdopterin biosynthesis MoeAprotein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
 
 0.817
BPP1936
Putative formate dehydrogenase, cytochrome B556subunit; Predicted by orpheus program; predicted by glimmer program.
 
     0.810
CJ1511C
Putative formate dehydrogenase largesubunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.763
RS01174
Putative formate dehydrogenase, iron-sulfur subunit; Predicted by orpheus program; predicted by glimmer program.
 
     0.751
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.