STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BP1480Hypothetical extracellular tungstate binding protein; Predicted by orpheus program; predicted by glimmer program. (283 aa)    
Predicted Functional Partners:
RSC2631
Putative ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.990
RSC2632
Putative ABC-type cobalt transport system, ATPase component; Predicted by orpheus program; predicted by glimmer program.
 
  
  0.955
RS01179
Putative formate dehydrogenase accessory protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
     0.811
SO4717
Putative sensor histidine kinase; Predicted by orpheus program; predicted by glimmer program.
 
     0.807
SO4723
Putative molybdopterin biosynthesis MoeAprotein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
   
 0.807
MOBAB
Putative molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
 
   
 0.806
SO4502
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.805
RSC2375
Hypothetical chaperone; Predicted by orpheus program; predicted by glimmer program.
 
     0.793
BPP1936
Putative formate dehydrogenase, cytochrome B556subunit; Predicted by orpheus program; predicted by glimmer program.
 
     0.783
CJ1511C
Putative formate dehydrogenase largesubunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.781
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.