STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRA1925Hypothetical Uncharacterized paraquat-inducible protein A; Predicted by orpheus program; predicted by glimmer program. (425 aa)    
Predicted Functional Partners:
YEBT
Hypothetical paraquat-inducible protein B; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.983
STY1085
Putative paraquat-inducible protein B; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.929
PBPRA1924
Putative ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
       0.598
STM1065
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.595
YEBU_1
Putative sun/nucleolar protein family protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
       0.572
lipB
Putative lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
   
    0.551
Z2879
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.495
proQ
Putative activator of ProP osmoprotectant transporter; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
       0.404
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.