STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Z4214Putative protein yqeB; Predicted by orpheus program; predicted by glimmer program. (532 aa)    
Predicted Functional Partners:
PBPRA1986
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.957
ECS3750
Hypotehtical ygfJ; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.929
C3459
Putative dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.915
C3458
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.903
PBPRA1939
Hypothetical dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.902
RB0790
Hypothetical CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.831
PBPRA1941
Hypothetical xanthine dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.821
C3456
Putative oxidoreductase, Fe-S subunit; Predicted by orpheus program; predicted by glimmer program.
 
     0.795
AGR_C_42
Putative xanthine dehydrogenase, XdhB subunit; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.770
PBPRA1992
Putative deacetylase; Predicted by orpheus program; predicted by glimmer program.
 
     0.763
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.