STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRA1986Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (300 aa)    
Predicted Functional Partners:
Z4214
Putative protein yqeB; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.957
ECS3750
Hypotehtical ygfJ; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.868
C3459
Putative dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.847
C3458
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.761
C3456
Putative oxidoreductase, Fe-S subunit; Predicted by orpheus program; predicted by glimmer program.
 
     0.742
ECS3752
Putative proteoglycan; Predicted by orpheus program; predicted by glimmer program.
 
    0.713
PBPRA1939
Hypothetical dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.704
BPP2124
Putative threonine dehydratase; Predicted by orpheus program; predicted by glimmer program.
 
    0.698
XDHC
Hypothetical xanthine dehydrogenase accessory factor XdhC; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.656
RB0790
Hypothetical CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.651
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.