STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STY0580Putative carbamate kinase; Predicted by orpheus program; predicted by glimmer program; Belongs to the carbamate kinase family. (300 aa)    
Predicted Functional Partners:
ARCB
Putative ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
 
 0.993
ARCB-2
Putative ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
 
 0.993
T4501
Putative arginine deiminase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.982
PLU0237
Putative glutamate-ammonia ligase; Predicted by orpheus program; predicted by glimmer program.
     
 0.903
SCI35.35
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glutamine synthetase family.
     
 0.903
CV3084
Putative NAD-glutamate dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
   
 
  0.902
SF0029
Putative carbamoyl-phosphate synthase, small subunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the CarA family.
     
  0.900
CARB
Putative carbamoylphosphate synthase large subunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the CarB family.
     
  0.900
SF1569
Putative glutaminase family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glutaminase family.
     
  0.900
PYRB
Putative aspartate transcarbamylase catalytic subunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
    
 0.828
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.