STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EF2577Putative carbamoyl transferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (395 aa)    
Predicted Functional Partners:
BPP2124
Putative threonine dehydratase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.896
argH
Putative argininosuccinase and n-acetylglutamate synthase; Predicted by orpheus program; predicted by glimmer program; In the N-terminal section; belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
  
  
 0.887
PBPRA1992
Putative deacetylase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.874
argC
Putative N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
 
  
 0.873
argG
Putative argininosuccinate synthase; Predicted by orpheus program; predicted by glimmer program; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.851
ARGA
Putative N-acetylglutamate synthase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.848
argB
Putative acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
 
  
 0.818
DHT
Hypothetical hydrolase ygeZ; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.817
argD
Putative acetylornithine aminotransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
 
  
 0.811
C3456
Putative oxidoreductase, Fe-S subunit; Predicted by orpheus program; predicted by glimmer program.
 
    0.804
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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