STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YGEVPutative transcriptional regulator; Predicted by orpheus program; predicted by glimmer program. (585 aa)    
Predicted Functional Partners:
RPON
Putative sigma factor N RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.818
VV20431
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.518
PBPRA0658
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.508
BB0813
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.508
BPP2124
Putative threonine dehydratase; Predicted by orpheus program; predicted by glimmer program.
 
     0.456
ATU4334
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.453
RSP0744
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.453
VVA0982
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.453
PBPRA1986
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.443
RS03568
Putative carboxyphosphonoenolpyruvate phosphonomutase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
     
 0.404
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.