Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
HD0814Putative arginine ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program. (223 aa)    
Predicted Functional Partners:
C0996
Putative ABC-type amino acid transport/signaltransduction system; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
 
 0.994
PM0123
Putative arginine ABC transporter, ATP-bindingprotein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.993
STY0922
Putative arginine ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
0.984
CV0855
Putative ABC-type histidine transport system, ATPase component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.869
CV3085
Putative amino acid ABC transporter, periplasmic amino acid-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
  
 0.819
PA2923
Hypothetical amino acid ABC transporter, periplasmic amino acid-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
 
  
 0.809
FLIY
Putative amino acid ABC transporter, periplasmic amino acid-binding portion; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
  
 0.806
AF0231
Hypothetical binding protein component ofABC transporter; Predicted by orpheus program; predicted by glimmer program.
  
 0.795
WS0279
Putative amino acid ABC transporter; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
 
  
 0.781
RA0042
Putative amino acid ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.772
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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