Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Y0547Putative coproporphyrinogen III oxidase; Predicted by orpheus program; predicted by glimmer program. (483 aa)    
Predicted Functional Partners:
Y0546
Putative heme iron utilization protein; Predicted by orpheus program; predicted by glimmer program.
   
 0.945
HD0620
Putative HugZ protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.803
VV21614
Hypothetical TonB protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.732
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.645
RSC1276
Putative cytochrome c oxidase, subunit CcoN; Predicted by orpheus program; predicted by glimmer program; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.604
PA4131
Putative FixG-related protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.578
RB11047
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.565
PP4251
Putative Cbb3-type cytochrome oxidase, cytochrome c subunit; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.562
SF2489
Putative coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
     
 0.556
VPA0402
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.539
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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