STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VV21614Hypothetical TonB protein; Predicted by orpheus program; predicted by glimmer program. (259 aa)    
Predicted Functional Partners:
SO3671
Putative ExbB-like protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.954
EXBD1
Putative ExbD, Biopolymer transport protein ExbD/TolR; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.914
Y3058
Putative TolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.906
SO1827-2
Putative TonB system transport protein ExbD2; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.903
SO1827
Putative TonB system transport protein ExbD2; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.902
Z3411
Hypothetical receptor; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.895
STY0792
Putative tolR membrane protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.869
S3696
Hypothetical outer membrane cobalamin receptor protein; Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans- periplasmic membrane protein TonB; Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily.
 
 
 
 0.868
STM1377
Putative lipoprotein; Predicted by orpheus program; predicted by glimmer program.
    
   0.815
VV2275
Putative TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.766
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.