Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO3671Putative ExbB-like protein; Predicted by orpheus program; predicted by glimmer program. (221 aa)    
Predicted Functional Partners:
VV21614
Hypothetical TonB protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.954
EXBD1
Putative ExbD, Biopolymer transport protein ExbD/TolR; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.905
SO1827-2
Putative TonB system transport protein ExbD2; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.894
SO1827
Putative TonB system transport protein ExbD2; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.888
STY0792
Putative tolR membrane protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.840
HMUT
Hypothetical hemin ABC transporter, periplasmichemin-binding protein HutB; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.760
PBPRA1347
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.654
TONB2
Hypothetical tonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.637
TONB2-2
Putative TonB2 protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.637
HMUU
Putative hemin ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.626
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.