STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMC02588Hypohetical ABC transporter, permeaseprotein; Predicted by orpheus program; predicted by glimmer program. (585 aa)    
Predicted Functional Partners:
SMC02134
Putative phosphatidylglycerophosphate synthase; Predicted by orpheus program; predicted by glimmer program; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.962
SMC02587
Putative ABC-type uncharacterized transport system ATPase component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.960
ECS2460
Putative ABC transporter, periplasmic substrate-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.943
PBPRA2113
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
 
   
 0.755
STM2283
Putative glycerol-3-phosphate transporter; Predicted by orpheus program; predicted by glimmer program.
      
 0.618
VP1000
Putative ABC-type arginine transport system, permease component; Predicted by orpheus program; predicted by glimmer program.
      
 0.618
RSC1174
Putative transmembrane ABC transporterprotein; Predicted by orpheus program; predicted by glimmer program.
      
 0.618
YAEE
Putative ABC-type metal ion transport system,permease component; Predicted by orpheus program; predicted by glimmer program.
      
 0.618
ECS2459
Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.466
VV21177
Putative ABC-type oligopeptide transport system, ATPase component; Predicted by orpheus program; predicted by glimmer program; Belongs to the ABC transporter superfamily.
      
 0.460
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.