Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PBPRA2168Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0267 family. (111 aa)    
Predicted Functional Partners:
Z1669
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.768
C0712
Putative C4-dicarboxylate transporter,anaerobic; Predicted by orpheus program; predicted by glimmer program.
  
     0.731
VV2687
Putative DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.706
MENC
Putative o-succinylbenzoate-CoA synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.691
YECM
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.673
PBPRA2947
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0253 family.
  
     0.658
STM4278
Hypothetical cytochrome c-type protein NrfB precursor; Predicted by orpheus program; predicted by glimmer program.
  
     0.643
Y0323
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.638
TYRP
Putative tyrosine-specific transport protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.604
VV11426
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.593
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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