STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hutUPutative urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (568 aa)    
Predicted Functional Partners:
CV0321
Putative imidazolonepropionase; Predicted by orpheus program; predicted by glimmer program; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
 
 
 0.999
CV0325
Putative histidine ammonia-lyase; Predicted by orpheus program; predicted by glimmer program; Belongs to the PAL/histidase family.
 
 0.999
RS00779
Putative histidine ammonia-lyase protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.997
SO0096
Putative histidine utilization repressor; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.917
hutG
Hypothetical formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
 
  
 0.883
RA0920
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.874
PBPRB1421
Hypothetical arginase family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the arginase family.
 
  
 0.729
gcvP
Putative glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
  
 0.707
VVA0030
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.613
hisC
Putative histidinol-phosphate aminotransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
  
 0.521
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.