STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGR_C_29Putative amino acid ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program. (274 aa)    
Predicted Functional Partners:
C4036
Putative ABC-type amino acid transport system, permease component; Predicted by orpheus program; predicted by glimmer program.
 
 0.998
ECS4142
Putative amino acid ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.995
R01478
Putative amino acid ABC transporter, periplasmic amino acid-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.990
CAC0878
Putative amino acid ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.941
WS0280
Hypothetical amino acid ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.932
VCA1040
Putative amino acid ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.931
ALR3187
Putative amino acid ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.929
PA2925
Putative ABC-type arginine/histidine transport system, permease component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.789
C0996
Putative ABC-type amino acid transport/signaltransduction system; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.780
PA2923
Hypothetical amino acid ABC transporter, periplasmic amino acid-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.780
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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