Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STM1084Putative sulfite reductase; Part of a sulfur-relay system. (128 aa)    
Predicted Functional Partners:
SF3363
Conserved hypothetical protein; Could be part of a sulfur-relay system; Belongs to the DsrE/TusD family.
 
 
 0.991
SF3361
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.957
YCFB
Putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.953
Y1515
Hypothetical ferredoxin-type protein NapF; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.899
SF3362
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the DsrF/TusC family.
 
  
 0.885
T1834
Putative carrier/transport protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the BI1 family.
     
 0.739
PP3997
Hypothetical glycosyl transferase; Predicted by orpheus program; predicted by glimmer program.
 
    0.663
SIRA
Conserved hypothetical protein; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
  
   
 0.607
ECS4142
Putative amino acid ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
       0.534
C4036
Putative ABC-type amino acid transport system, permease component; Predicted by orpheus program; predicted by glimmer program.
       0.534
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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