Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SMC01169Putative alanine dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the AlaDH/PNT family. (373 aa)    
Predicted Functional Partners:
PBPRA3034
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.929
AAT
Putative aspartate aminotransferase; Predicted by orpheus program; predicted by glimmer program.
     
 0.905
PLU2168
Putative NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
      0.903
CV2022
Putative alanine dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the AlaDH/PNT family.
  
  
 
0.901
ALR
Putative alanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.901
ALR-2
Putative alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.901
ALR-3
Putative alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.901
SYNW1075
Putative Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; Predicted by orpheus program; predicted by glimmer program.
     
  0.900
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
    
 0.863
STM1647
Putative D-Lactate dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.824
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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