Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABC-NBDPutative ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity). (564 aa)    
Predicted Functional Partners:
YDCF
Putative ABC transporter, membrane-spanning permease; Predicted by orpheus program; predicted by glimmer program.
 
 0.997
LL0324
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.966
Z3559
Putative phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
    0.783
BPP3592
Putative peptide ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.741
OPPA
Putative oligopeptide ABC transporter,periplasmic oligopeptide-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.733
PYRAB093
Putative peptide ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.705
PLU2492
Putative oligopeptide ABC transporter, permeaseprotein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.705
R02255
Hypothetical ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.705
Y2026
Hypothetical oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Predicted by orpheus program; predicted by glimmer program.
  
 0.696
R02595
Putative peptide ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.690
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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