STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RA0906Putative transcriptional regulator, GntR family; Predicted by orpheus program; predicted by glimmer program. (248 aa)    
Predicted Functional Partners:
RB1169
Putative polysaccharide deacetylase family protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.637
T3631
Hypothetical GntR-famly transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.627
YFCB
Putative adenine-specific methylase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
   
   0.577
RSC2121
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.556
AGR_C_42-2
Putative transthyretin family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.530
S0075
Putative acetolactate synthase III, small subunit; Predicted by orpheus program; predicted by glimmer program.
   
    0.508
S0112
Putative pyruvate dehydrogenase complexrepressor; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.490
T4556
Putative transcriptional regulatory protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.472
AGR_C_43
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.436
ATU2314
Conserved hypothetical protein, membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.426
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.