Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
XDHCHypothetical xanthine dehydrogenase accessory factor XdhC; Predicted by orpheus program; predicted by glimmer program. (277 aa)    
Predicted Functional Partners:
AGR_C_42
Putative xanthine dehydrogenase, XdhB subunit; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.984
SMB21011
Putative xanthine dehydrogenase, XdhA subunit; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.964
GUAD
Putative guanine aminohydrolase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
    0.914
PBPRA1939
Hypothetical dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.907
C3459
Putative dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.891
PBPRA1941
Hypothetical xanthine dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.835
RB0790
Hypothetical CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.816
ATU2314
Conserved hypothetical protein, membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.788
AGR_C_42-2
Putative transthyretin family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.762
C3458
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.757
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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