Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCO6213Putative hydroxydechloroatrazine ethylaminohydrolase; Predicted by orpheus program; predicted by glimmer program. (454 aa)    
Predicted Functional Partners:
BA1592
Hypothetical xanthine/uracil permease; Predicted by orpheus program; predicted by glimmer program.
 
    0.661
AGR_C_42-2
Putative transthyretin family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.637
C3459
Putative dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.588
C3458
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.586
PBPRA1939
Hypothetical dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
    0.503
XDHC
Hypothetical xanthine dehydrogenase accessory factor XdhC; Predicted by orpheus program; predicted by glimmer program.
 
    0.474
ATU2314
Conserved hypothetical protein, membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.468
C3456
Putative oxidoreductase, Fe-S subunit; Predicted by orpheus program; predicted by glimmer program.
 
    0.444
RSC2121
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.433
STY4046
Putative xanthine/uracil permease; Predicted by orpheus program; predicted by glimmer program.
 
    0.428
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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