STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGR_C_43Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program. (202 aa)    
Predicted Functional Partners:
ATU2314
Conserved hypothetical protein, membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.586
GUAD
Putative guanine aminohydrolase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
     0.501
RSC2121
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.478
AGR_C_42-2
Putative transthyretin family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.462
RB1169
Putative polysaccharide deacetylase family protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.453
SMB21293
Putative guanine aminohydrolase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
     0.443
XDHC
Hypothetical xanthine dehydrogenase accessory factor XdhC; Predicted by orpheus program; predicted by glimmer program.
 
     0.438
RA0906
Putative transcriptional regulator, GntR family; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.436
allA
Putative ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
  
     0.432
ECS0359
Putative transcriptional regulator; Repressor involved in choline regulation of the bet genes.
  
     0.422
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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