Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NANAPutative N-acetylneuraminate lyase; Predicted by orpheus program; predicted by glimmer program. (298 aa)    
Predicted Functional Partners:
PBPRA2284
Hypothetical glucose kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.964
CITF
Putative citrate lyase, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
   
    0.843
STY0669
Hypothetical citX protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.826
PM0150
Putative chorismate mutase/prephenate dehydratase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.749
HD1852
Putative N-acetylmannosamine-6-phosphate 2-epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
  
 0.690
STM2669
Putative chorismate mutase/prephenate dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.685
SF1726
Putative sulfatase; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.680
dapB
Putative dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
 
  
 0.663
RPS15
Putative ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
    0.628
Y3215
Putative sulfatase; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.627
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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