Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
JHP0012Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (274 aa)    
Predicted Functional Partners:
CITF
Putative citrate lyase, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
     
 0.760
STY0669
Hypothetical citX protein; Predicted by orpheus program; predicted by glimmer program.
       0.614
STY0671
Putative citrate lyase, beta subunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the HpcH/HpaI aldolase family.
       0.613
STY0072
Hypothetical citG protein; Predicted by orpheus program; predicted by glimmer program.
       0.567
WS1240
Hypothetical Ccm2-related protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.470
VP2167
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.437
PBPRA2294
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.428
T3267
Putative oxaloacetate decarboxylase, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
      
 0.425
STY0674
Putative sensor kinase citA; Predicted by orpheus program; predicted by glimmer program.
      
 0.425
PBPRA2303
Hypothetical hemolysin secretion protein HylB; Predicted by orpheus program; predicted by glimmer program.
      
 0.425
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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