STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STY0072Hypothetical citG protein; Predicted by orpheus program; predicted by glimmer program. (314 aa)    
Predicted Functional Partners:
STY0669
Hypothetical citX protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
STY0671
Putative citrate lyase, beta subunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.993
CITF
Putative citrate lyase, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.982
STM0624
Hypothetical citrate (pro-3S)-lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
  
 0.968
CPE1152
Putative citrate-sodium symporter; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.678
PBPRA2294
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.572
JHP0012
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.570
C2861
Putative acetyl-CoA carboxylase, carboxyl transferase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
  
 0.526
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.