Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STY0669Hypothetical citX protein; Predicted by orpheus program; predicted by glimmer program. (175 aa)    
Predicted Functional Partners:
STY0072
Hypothetical citG protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
CITF
Putative citrate lyase, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.996
STY0671
Putative citrate lyase, beta subunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.996
STM0624
Hypothetical citrate (pro-3S)-lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
 
 0.967
NANA
Putative N-acetylneuraminate lyase; Predicted by orpheus program; predicted by glimmer program.
   
    0.826
DAPA
Putative dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
   
    0.826
CPE1152
Putative citrate-sodium symporter; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.772
SGBE
Putative sugar isomerase SgaE, AraD/FucA family; Predicted by orpheus program; predicted by glimmer program.
   
    0.754
JHP0012
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.614
PBPRA2294
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.572
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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