Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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STY1258Putative ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (249 aa)    
Predicted Functional Partners:
YCFW
Putative ABC transporter, integral membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.993
PLU2814
Putative ABC transporter integral membrane subunit; Predicted by orpheus program; predicted by glimmer program.
 
 0.993
VV21005
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.923
VP1997
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.915
LOLA
Hypothetical outer membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.836
VPA0558
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.814
VPA0559
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.795
VPA0017
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.791
VV10255
Hypothetical outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.755
HD1953
Putative ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
   
 0.689
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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