STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Y0988Putative antioxidant, AhpC/Tsa family; Predicted by orpheus program; predicted by glimmer program. (205 aa)    
Predicted Functional Partners:
NMB0946
Putative peroxiredoxin/glutaredoxin family protein; Predicted by orpheus program; predicted by glimmer program.
  
 0.935
PBPRB1551
Hypothetical thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.926
C1025
Putative thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.840
C2732
Putative thiol:disulfide interchange protein DsbE; Predicted by orpheus program; predicted by glimmer program.
  
 0.775
PHG219
Hypothetical thiol:disulfide interchange protein DsbE; Predicted by orpheus program; predicted by glimmer program.
  
 0.775
T1804
Hypothetical thioredoxin; Predicted by orpheus program; predicted by glimmer program.
  
 0.775
ASL7641
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 0.758
CPE0911
Putative glutathione peroxidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the glutathione peroxidase family.
   
 
 0.739
CV3549
Putative catalase; Predicted by orpheus program; predicted by glimmer program; Belongs to the catalase family.
  
 
 0.692
STY2729
Putative bacterioferritin comigratory protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.688
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.