Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
T0462Phosphoglycerate transport system transcription regulator; Predicted by orpheus program; predicted by glimmer program. (427 aa)    
Predicted Functional Partners:
VV20209
Hypothetical phosphoglycerate transport regulatory protein PgtB; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.995
VPA0825
Hypothetical phosphoglycerate transport regulatory protein PgtC; Predicted by orpheus program; predicted by glimmer program.
 
     0.837
PA1454
Putative MinD-related protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.753
VVA1649
Hypothetical Signal transduction histidine kinase regulating C4-dicarboxylate transport system; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.748
SMB21201
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.742
GLNL
Putative nitrogen regulation protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.713
RSC3129
Hypothetical sigma-54 dependent transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
  
     0.649
TTRS
Hypothetical histidine kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.643
RPON
Putative sigma factor N RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.574
VV20716
Hypothetical CheY-like receiver protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.569
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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