STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C3011Hypothetical Zn-dependent protease; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state. (485 aa)    
Predicted Functional Partners:
PP1645
Putative arsenate reductase ArsC; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.750
SO2872
Conserved hypothetical membrane protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.656
SURA
Putative survival protein SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
 
  
 0.654
SO3636
Hypothetical organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
  
 0.652
RS05245
Putative Trp repressor-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the WrbA family.
  
    0.636
VPA1271
Putative thiol:disulfide interchange protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.607
VP2834
Putative NlpD-related protein family M37 unassigned peptidase (NlpD protein); Predicted by orpheus program; predicted by glimmer program.
 
 
   0.573
STY3364
Putative outer membrane protein TolC; Predicted by orpheus program; predicted by glimmer program.
  
    0.532
ECS2540
Putative tail-specific protease; Predicted by orpheus program; predicted by glimmer program.
 
   0.526
Y3127
Putative surface antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.487
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.