Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
TM0501ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Predicted by orpheus program; predicted by glimmer program; Belongs to the ABC transporter superfamily. (328 aa)    
Predicted Functional Partners:
R02595
Putative peptide ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.986
AGR_L_28
Hypothetical ABC transporter permease; Predicted by orpheus program; predicted by glimmer program.
 
 0.983
YPO2184
Putative oligopeptide ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 0.982
PYRAB153
Putative peptide ABC transporter, permeaseprotein; Predicted by orpheus program; predicted by glimmer program.
 
 0.968
SAV2765
Putative ABC-type oligopeptide transportsystem, ATPase component; Predicted by orpheus program; predicted by glimmer program; Belongs to the ABC transporter superfamily.
 
  
0.954
RS04550
Putative peptide ABC transporter,permease protein; Predicted by orpheus program; predicted by glimmer program.
   
 0.927
PLU2492
Putative oligopeptide ABC transporter, permeaseprotein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.924
RSC1174
Putative transmembrane ABC transporterprotein; Predicted by orpheus program; predicted by glimmer program.
 
     0.924
R02255
Hypothetical ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.910
PYRAB093
Putative peptide ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.909
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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