Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RNC | RPMA | PBPRA3089 | PBPRA0395 | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative Ribosomal protein L27; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL27 family. | 0.913 |
| RNC | S0162 | PBPRA3089 | PBPRA2968 | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative 30S ribosomal protein S2; Predicted by orpheus program; predicted by glimmer program; Belongs to the universal ribosomal protein uS2 family. | 0.931 |
| RNC | S2801 | PBPRA3089 | PBPRA3088 | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.939 |
| RNC | S4411 | PBPRA3089 | PBPRA0321 | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.900 |
| RNC | SO0227 | PBPRA3089 | PBPRA0314 | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.899 |
| RNC | SO1347 | PBPRA3089 | PBPRA3090 | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative signal peptidase I; Predicted by orpheus program; predicted by glimmer program; Belongs to the peptidase S26 family. | 0.907 |
| RNC | frr | PBPRA3089 | PBPRA2965 | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.910 |
| RNC | rplS | PBPRA3089 | PBPRA3038 | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.900 |
| RNC | rplT | PBPRA3089 | PBPRA2157 | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.910 |
| RNC | rpsI | PBPRA3089 | PBPRA3236 | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Putative 30S ribosomal subunit protein S9; Predicted by orpheus program; predicted by glimmer program; Belongs to the universal ribosomal protein uS9 family. | 0.909 |
| RPMA | RNC | PBPRA0395 | PBPRA3089 | Putative Ribosomal protein L27; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL27 family. | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.913 |
| RPMA | S0162 | PBPRA0395 | PBPRA2968 | Putative Ribosomal protein L27; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL27 family. | Putative 30S ribosomal protein S2; Predicted by orpheus program; predicted by glimmer program; Belongs to the universal ribosomal protein uS2 family. | 0.987 |
| RPMA | S4411 | PBPRA0395 | PBPRA0321 | Putative Ribosomal protein L27; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL27 family. | Putative ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.986 |
| RPMA | SO0227 | PBPRA0395 | PBPRA0314 | Putative Ribosomal protein L27; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL27 family. | Putative ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.990 |
| RPMA | frr | PBPRA0395 | PBPRA2965 | Putative Ribosomal protein L27; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL27 family. | Putative ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.961 |
| RPMA | rplS | PBPRA0395 | PBPRA3038 | Putative Ribosomal protein L27; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL27 family. | Putative ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.994 |
| RPMA | rplT | PBPRA0395 | PBPRA2157 | Putative Ribosomal protein L27; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL27 family. | Putative large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.988 |
| RPMA | rpsI | PBPRA0395 | PBPRA3236 | Putative Ribosomal protein L27; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL27 family. | Putative 30S ribosomal subunit protein S9; Predicted by orpheus program; predicted by glimmer program; Belongs to the universal ribosomal protein uS9 family. | 0.989 |
| S0162 | RNC | PBPRA2968 | PBPRA3089 | Putative 30S ribosomal protein S2; Predicted by orpheus program; predicted by glimmer program; Belongs to the universal ribosomal protein uS2 family. | Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.931 |
| S0162 | RPMA | PBPRA2968 | PBPRA0395 | Putative 30S ribosomal protein S2; Predicted by orpheus program; predicted by glimmer program; Belongs to the universal ribosomal protein uS2 family. | Putative Ribosomal protein L27; Predicted by orpheus program; predicted by glimmer program; Belongs to the bacterial ribosomal protein bL27 family. | 0.987 |
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