Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4534Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (67 aa)    
Predicted Functional Partners:
STY1335
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.774
YPO3223
Hypothetical transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.770
PBPRA0837
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0255 family.
  
     0.761
STY0233
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0325 family.
  
  
 0.754
PBPRB1639
Hypothetical outer membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.750
STY3782
Conserved hypothetical protein; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
   
 0.746
VC2346
Putative SerB-cotransposed membrane protein precursor; Predicted by orpheus program; predicted by glimmer program.
  
     0.740
PBPRA2397
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0227 family.
  
     0.740
S4535
Hypothetical transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
     0.726
Y0323
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.722
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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