STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TAPBPutative type IV pilin assembly protein PilB; Predicted by orpheus program; predicted by glimmer program. (545 aa)    
Predicted Functional Partners:
PILC
Putative Type IV pilin biogenesis protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.974
ETPF
Putative general secretion pathway protein F; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.938
MSHG
Putative MSHA biogenesis protein MshG; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.937
PSPTO092
Putative leader peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.924
PBPRA3473
Hypothetical general secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.899
GSPG
Putative type II secretory pathway, pseudopilin EpsG; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.854
PILA
Hypothetical pilin PilA; Predicted by orpheus program; predicted by glimmer program; Belongs to the N-Me-Phe pilin family.
 
   
 0.813
RS01326
Putative fimbrial assembly protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.787
VC2634
Hypothetical fimbrial assembly protein PilM; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.733
PBPRB1614
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.665
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.