Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Y0131Putative stringent starvation protein B; Predicted by orpheus program; predicted by glimmer program. (168 aa)    
Predicted Functional Partners:
T3259
Putative stringent starvation protein A; Predicted by orpheus program; predicted by glimmer program; Belongs to the GST superfamily.
 
  
 0.996
CLPX
Putative ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
    
 
 0.909
SF2634
Putative sigma-E factor negative regulatory protein RseA; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while [...]
    
 
 0.873
PBPRB0252
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.846
RSC2927
Putative ubiquinol--cytochrome c reductase,cytochrome c1; Predicted by orpheus program; predicted by glimmer program.
 
    0.800
YPO2877
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.758
STY0697
Hypothetical DNA polymerase III, delta subunit; Predicted by orpheus program; predicted by glimmer program.
  
     0.756
BA4092
Hypothetical protease/scaffold protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the peptidase S14 family.
    
 
 0.754
PLU3869
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
    
 
 0.754
PI323
Hypothetical ClpP family serine protease, possible phage related; Predicted by orpheus program; predicted by glimmer program; Belongs to the peptidase S14 family.
    
 
 0.754
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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