Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S3451Putative ABC superfamily transport protein; Predicted by orpheus program; predicted by glimmer program. (166 aa)    
Predicted Functional Partners:
YPO3572
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
STM3312
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.999
T3230
Putative ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.998
Z4554
Hypothetical anti-sigma B factor antagonist; Predicted by orpheus program; predicted by glimmer program.
  
 0.994
Z3610
Hypothetical VacJ lipoprotein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.876
Y0141
Putative BolA/YrbA family protein,transcriptional regulator; Predicted by orpheus program; predicted by glimmer program; Belongs to the BolA/IbaG family.
     
 0.834
VP1476
Hypothetical anti-anti-sigma regulatory factor; Predicted by orpheus program; predicted by glimmer program; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.803
XAC2864
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.803
VV0461
Putative UDP-N-acetylglucosamine1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.802
PBPRB0283
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
   0.787
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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