STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C3964Putative nitrogen regulatory IIA protein PtsN; Predicted by orpheus program; predicted by glimmer program. (143 aa)    
Predicted Functional Partners:
PLU4045
Putative phosphocarrier protein NPr; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.995
T3238
Putative sigma-54 modulation protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.977
PLU4044
Conserved hypothetical protein; Displays ATPase and GTPase activities.
  
  
 0.964
PBPRA2718
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.940
RPON
Putative sigma factor N RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.916
VVA0188
Putative PTS system, fructose-specific IIABC component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.879
SF2252
PTS system, fructose-specific IIBC component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.861
Y1487
Putative phosphoenolpyruvate-proteinphosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
 
  
 0.829
PTSP
Hypothetical phosphoenolpyruvate-protein phosphotransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the PEP-utilizing enzyme family.
  
   
 0.816
C4416
Putative mannitol-specific IIABC component, PTS system; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.797
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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