Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
PLU4044Conserved hypothetical protein; Displays ATPase and GTPase activities. (282 aa)    
Predicted Functional Partners:
C3964
Putative nitrogen regulatory IIA protein PtsN; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.964
T3238
Putative sigma-54 modulation protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.913
C0861
Conserved hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
  
 0.904
PLU4045
Putative phosphocarrier protein NPr; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.903
SO4094
Putative ribonucleases G and E; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.851
T1734
Putative ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
   
 
 0.830
PBPRA2718
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.829
VVA0188
Putative PTS system, fructose-specific IIABC component; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.803
RPON
Putative sigma factor N RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.749
PBPRA2416
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.721
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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