Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STY3548Putative TldD, Zn-dependent proteases and theirinactivated homologs; Predicted by orpheus program; predicted by glimmer program. (487 aa)    
Predicted Functional Partners:
PLU4060
Putative pmbA protein; Predicted by orpheus program; predicted by glimmer program.
 
 
0.887
VVA0969
Putative PmbA-related protein; Predicted by orpheus program; predicted by glimmer program.
 
 
0.887
YPO3671
Putative carbon-nitrogen hydrolase; Predicted by orpheus program; predicted by glimmer program.
  
    0.814
VV2929
Hypothetical membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.746
SO4094
Putative ribonucleases G and E; Predicted by orpheus program; predicted by glimmer program.
       0.646
S3503
Putative Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.636
SO4098
Putative MreB, Actin-like ATPase involved in cell morphogenesis; Predicted by orpheus program; predicted by glimmer program.
 
     0.526
PM1957
Hypothetical rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
       0.491
S3505
Putative rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.491
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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