Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO1297-2Hypothetical type II secretory pathway, component ExeA; Predicted by orpheus program; predicted by glimmer program. (280 aa)    
Predicted Functional Partners:
MSHL
Putative MSHA biogenesis protein MshL; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.924
VV2949
Hypothetical MSHA biogenesis protein MshJ; Predicted by orpheus program; predicted by glimmer program.
 
    0.919
VV2950
Hypothetical MSHA biogenesis protein MshI; Predicted by orpheus program; predicted by glimmer program.
 
     0.881
MSHG
Putative MSHA biogenesis protein MshG; Predicted by orpheus program; predicted by glimmer program.
 
    0.871
PBPRA3281
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.861
VC0401
Hypothetical MSHA biogenesis protein MshK; Predicted by orpheus program; predicted by glimmer program.
       0.841
RB12774
Putative MSHA biogenesis protein MshE; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.832
VC0409
Putative MSHA pilin protein MshA; Predicted by orpheus program; predicted by glimmer program.
 
     0.797
MSHB
Putative MSHA pilin protein MshB; Predicted by orpheus program; predicted by glimmer program.
 
     0.666
PBPRA3278
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.653
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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