STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OB1639Putative sodium/solute symporter; Predicted by orpheus program; predicted by glimmer program; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (567 aa)    
Predicted Functional Partners:
ASL1679
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.968
VV20916
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.934
VP1725
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.923
PA3233
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.894
PA3232
Putative DNA polymerase III, epsilon subunit; Predicted by orpheus program; predicted by glimmer program.
 
    0.829
VV20917
Putative DNA polymerase III; Predicted by orpheus program; predicted by glimmer program.
 
    0.673
ACS
Putative acetyl-CoA synthase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.659
SMC04095
Putative Acyl-coenzyme A synthetase;AMP-(fatty) acid ligase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.659
MLR6539
Putative acetyl-CoA synthase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.659
SO2855
Putative DNA polymerase III, epsilon subunit; Predicted by orpheus program; predicted by glimmer program.
 
    0.561
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.