Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
PA3232Putative DNA polymerase III, epsilon subunit; Predicted by orpheus program; predicted by glimmer program. (207 aa)    
Predicted Functional Partners:
PA3233
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.986
VV20917
Putative DNA polymerase III; Predicted by orpheus program; predicted by glimmer program.
  
  
  0.961
DNAQ-1
Putative DNA polymerase III; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.934
SO2855
Putative DNA polymerase III, epsilon subunit; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.924
VP1725
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.920
VV20916
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.919
PLU0943
Putative DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
     
  0.900
OB1639
Putative sodium/solute symporter; Predicted by orpheus program; predicted by glimmer program; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.829
ACS
Putative acetyl-CoA synthase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
 
    0.701
DNAE
Putative DNA polymerase III, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.691
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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