Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
STY4386Putative transcriptional regulator, MerR family; Predicted by orpheus program; predicted by glimmer program. (141 aa)    
Predicted Functional Partners:
SF4078
Putative osphoribosylaminoimidazolecarboxamideformyltransferase/IMP cyclohydrolase; Predicted by orpheus program; predicted by glimmer program.
       0.634
CV2087
Putative transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
  
     0.585
rpoB
Putative DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.574
VV3143
Putative phosphoribosylamine-glycine ligase; Predicted by orpheus program; predicted by glimmer program; Belongs to the GARS family.
       0.532
PLU0237
Putative glutamate-ammonia ligase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.498
R01996
Putative cation efflux family protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.456
ECS3950
Putative DNA-directed RNA polymerase, sigmasubunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
 
 
 0.443
rpoA
Putative DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.441
rpoC
Putative RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.441
SCI35.35
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glutamine synthetase family.
  
 
 0.428
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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