Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PBPRA3473Hypothetical general secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (448 aa)    
Predicted Functional Partners:
C3699
Putative general secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.990
SO0173
Hypothetical general secretion pathway protein K; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.983
VV0224
Hypothetical general secretion pathway protein N; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.971
VP0139
Putative Type II secretory pathway, component EpsJ; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.958
GSPC
Putative general secretion pathway protein C; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.954
GSPI
Putative type II secretory pathway, pseudopilin EpsI; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.949
GSPE
Putative general secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.949
VP0137
Putative general secretion pathway protein H; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.941
SO0166
Putative type II secretory pathway, component EpsD; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.940
TAPB
Putative type IV pilin assembly protein PilB; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.899
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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