Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GSPIPutative type II secretory pathway, pseudopilin EpsI; Predicted by orpheus program; predicted by glimmer program. (106 aa)    
Predicted Functional Partners:
VP0139
Putative Type II secretory pathway, component EpsJ; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.999
SO0173
Hypothetical general secretion pathway protein K; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.996
VP0137
Putative general secretion pathway protein H; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.970
GSPC
Putative general secretion pathway protein C; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.969
SO0166
Putative type II secretory pathway, component EpsD; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.959
PBPRA3473
Hypothetical general secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.949
C3699
Putative general secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.943
VV0224
Hypothetical general secretion pathway protein N; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.928
ETPF
Putative general secretion pathway protein F; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.917
GSPG
Putative type II secretory pathway, pseudopilin EpsG; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.910
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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