Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO0406Putative thioredoxin; Predicted by orpheus program; predicted by glimmer program; Belongs to the thioredoxin family. (112 aa)    
Predicted Functional Partners:
C1025
Putative thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
 
 0.977
cysH
Putative phosphoadenosine phosphosulfatereductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
    
 
 0.855
GROEL
Putative chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.809
Y0361
Putative transcription termination factor; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
  
    0.806
PBPRB1551
Hypothetical thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.762
CPE0911
Putative glutathione peroxidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the glutathione peroxidase family.
  
  
 0.724
rhlB
Putative ATP-dependent RNA helicase, DEAD boxfamily; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily.
       0.683
PLU2551
Putative selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
      
 0.674
EF2567
Hypothetical selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
      
 0.674
FUR
Putative Fur, Fe2+/Zn2+ uptake regulation proteins; Predicted by orpheus program; predicted by glimmer program; Belongs to the Fur family.
  
 
 0.669
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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