STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Z4656Hypothetical Smf protein; Predicted by orpheus program; predicted by glimmer program. (365 aa)    
Predicted Functional Partners:
Z4768
Hypothetical ComF-related protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.935
PBPRA2386
Hypothetical Rec2-related protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.909
COMM
Putative ComM-related protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.890
PSPTO092
Putative leader peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.865
smg
Putative Smg protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the Smg family.
     
 0.844
T4101
Putative DNA topoisomerase I-related protein; Predicted by orpheus program; predicted by glimmer program.
    
 0.841
VC0047
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.841
PURK
Hypothetical phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.773
CV3079
Putative DNA repair protein RadC; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0758 family.
  
  
 0.702
RECA
Putative RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.701
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.