STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGR_PAT_-5Putative transcriptional regulator, AraC/XylS family; Predicted by orpheus program; predicted by glimmer program. (264 aa)    
Predicted Functional Partners:
MLL2686
Putative transcriptional regulator, AraC/XylS family; Predicted by orpheus program; predicted by glimmer program.
  
     0.737
SCO7397
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.563
ATU5339
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.458
LPP
Putative outer membrane lipoprotein; Predicted by orpheus program; predicted by glimmer program.
  
     0.423
VVA0998
Hypothetical transcriptional regulator, TetR family; Predicted by orpheus program; predicted by glimmer program.
 
     0.405
CV4366
Putative transcriptional regulator, AraC/XylSfamily; Predicted by orpheus program; predicted by glimmer program.
  
     0.402
rpoA
Putative DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.400
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.